Psalm 103:13 As a father pities his children, So the Lord pities those who fear Him.
Just as a parent will correct a child after they do something wrong, so does the parent show pity on a child when they do not understand what they do wrong.
God is not going to destroy anyone who does not do exactly what He says. It is OK to question what is going on. It is OK to ask Him why. It is OK to stop and think.
God has pity on His people. He has pity on us because He knows we are still learning to love Him.